[PATCH] gnu: r-classdiscovery: Update to 3.4.0.

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2 participants
  • Navid Afkhami
  • Ricardo Wurmus
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unassigned
Submitted by
Navid Afkhami
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normal
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N
Navid Afkhami wrote on 25 Aug 2023 13:15
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
86f4a95a7ee7469b7e79f26a481700f6ba2d1395.1692962151.git.navid.afkhami@mdc-berlin.de
* gnu/packages/cran.scm (r-classdiscovery): Update to 3.4.0.
---
gnu/packages/cran.scm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)

Toggle diff (28 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 43a9e11fea..9226805717 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -66,6 +66,7 @@ (define-module (gnu packages cran)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
#:use-module (gnu packages base)
+ #:use-module (gnu packages bioconductor)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages c)
#:use-module (gnu packages compression)
@@ -1630,7 +1631,7 @@ (define-public r-classdiscovery
(synopsis
"Classes and methods for \"Class Discovery\" with microarrays or proteomics")
(description
- "This package defines classes for \"class discovery\" in OOMPA project.
+ "This package defines classes for \"class discovery\" in OOMPA project.
Class discovery primarily consists of unsupervised clustering methods
with attempts to assess their statistical significance.")
(license license:asl2.0)))

base-commit: 1c916c167b7eb1f2f8af2cf621aa1512b00b1033
prerequisite-patch-id: ab9aad8c0ca60c38323f24b41dd3d5b1c3286e10
prerequisite-patch-id: c57cd1d51559f364cccdc54030deb28d7692bf48
prerequisite-patch-id: fbceb485e63c38a57a5c46288287479afe028191
--
2.34.1
N
N
Navid Afkhami wrote on 28 Aug 2023 14:34
[PATCH] gnu: Add r-classdiscovery.
(address . 65530@debbugs.gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
97955c28991010a44b9c3579b1798fd38c20c6f5.1693226058.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-classdiscovery): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)

Toggle diff (40 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0e01f3115d..81fe723779 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13924,6 +13924,31 @@ (define-public r-enrichplot
All the visualization methods are developed based on ggplot2 graphics.")
(license license:artistic2.0)))
+;; This is a CRAN package, but it depends on Bioconductor packages and module.
+;; That is why we added it here!
+(define-public r-classdiscovery
+ (package
+ (name "r-classdiscovery")
+ (version "3.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "ClassDiscovery" version))
+ (sha256
+ (base32
+ "06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s"))))
+ (properties `((upstream-name . "ClassDiscovery")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-cluster r-mclust r-oompabase
+ r-oompadata))
+ (home-page "http://oompa.r-forge.r-project.org/")
+ (synopsis
+ "Classes and Methods for \"Class Discovery\" with Microarrays or Proteomics")
+ (description
+ "This package defines classes for \"class discovery\" in OOMPA project.
+Class discovery primarily consists of unsupervised clustering methods
+with attempts to assess their statistical significance.")
+ (license license:asl2.0)))
+
(define-public r-clusterprofiler
(package
(name "r-clusterprofiler")

base-commit: 4a49a89b09d07d96f4d6ef3c0ca93801370f7b20
--
2.34.1
R
R
Ricardo Wurmus wrote on 28 Aug 2023 17:10
[PATCH] gnu: r-classdiscovery: Update to 3.4.0.
(address . 65530-done@debbugs.gnu.org)
87r0nndwx4.fsf@elephly.net
Thanks for the corrected patch. I’ve applied it.

--
Ricardo
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